#!/bin/bash

#load modules
module load python/2.7.6

#"parseVCF.py" python script downloaded from https://github.com/simonhmartin/genomics_general/blob/master/VCF_processing/parseVCF.py
python parseVCF.py -i ./min_30_ind_salmon_phased.vcf.gz | gzip > ./min_30_ind_salmon_phased.geno.gz

